Variant report

Variant	rs73863227
Chromosome Location	chr4:166521734-166521735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs73861094	1.00[AMR][1000 genomes]
rs73861096	1.00[AMR][1000 genomes]
rs73861097	1.00[AMR][1000 genomes]
rs73863214	1.00[AMR][1000 genomes]
rs73863218	1.00[AMR][1000 genomes]
rs73863219	1.00[AMR][1000 genomes]
rs73863220	1.00[AMR][1000 genomes]
rs73863221	1.00[AMR][1000 genomes]
rs73863222	1.00[AMR][1000 genomes]
rs73863223	1.00[AMR][1000 genomes]
rs73863226	1.00[AMR][1000 genomes]
rs73863232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863241	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863242	1.00[AMR][1000 genomes]
rs73863244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863246	1.00[AMR][1000 genomes]
rs73863248	1.00[AMR][1000 genomes]
rs7438657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166520000-166524400	Weak transcription	Pancreas	Pancrea
3	chr4:166521200-166525600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:166521400-166523600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:166521400-166524400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:166521600-166522200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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