Variant report
| Variant | rs73863246 |
|---|---|
| Chromosome Location | chr4:166563160-166563161 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs73861094 | 1.00[AMR][1000 genomes] |
| rs73861096 | 1.00[AMR][1000 genomes] |
| rs73861097 | 1.00[AMR][1000 genomes] |
| rs73863214 | 1.00[AMR][1000 genomes] |
| rs73863218 | 1.00[AMR][1000 genomes] |
| rs73863219 | 1.00[AMR][1000 genomes] |
| rs73863220 | 1.00[AMR][1000 genomes] |
| rs73863221 | 1.00[AMR][1000 genomes] |
| rs73863222 | 1.00[AMR][1000 genomes] |
| rs73863223 | 1.00[AMR][1000 genomes] |
| rs73863226 | 1.00[AMR][1000 genomes] |
| rs73863227 | 1.00[AMR][1000 genomes] |
| rs73863232 | 1.00[AMR][1000 genomes] |
| rs73863241 | 1.00[AMR][1000 genomes] |
| rs73863242 | 1.00[AMR][1000 genomes] |
| rs73863244 | 1.00[AMR][1000 genomes] |
| rs73863248 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7438657 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830141 | chr4:166502908-166689626 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028337 | chr4:166544699-166659468 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv537338 | chr4:166544699-166659468 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166556600-166569200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
