Variant report

Variant	rs73863241
Chromosome Location	chr4:166535533-166535534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs73861094	1.00[AMR][1000 genomes]
rs73861096	1.00[AMR][1000 genomes]
rs73861097	1.00[AMR][1000 genomes]
rs73863214	1.00[AMR][1000 genomes]
rs73863218	1.00[AMR][1000 genomes]
rs73863219	1.00[AMR][1000 genomes]
rs73863220	1.00[AMR][1000 genomes]
rs73863221	1.00[AMR][1000 genomes]
rs73863222	1.00[AMR][1000 genomes]
rs73863223	1.00[AMR][1000 genomes]
rs73863226	1.00[AMR][1000 genomes]
rs73863227	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863242	1.00[AMR][1000 genomes]
rs73863244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863246	1.00[AMR][1000 genomes]
rs73863248	1.00[AMR][1000 genomes]
rs7438657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166525600-166539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166530400-166536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:166531600-166536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:166533400-166537000	Weak transcription	Fetal Brain Male	brain
5	chr4:166534200-166535800	Enhancers	Colon Smooth Muscle	Colon
6	chr4:166534400-166535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:166535000-166542600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:166535200-166535600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166535400-166536000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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