Variant report

Variant	rs17505691
Chromosome Location	chr8:119065200-119065201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119064917..119066588-chr8:119122468..119124143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10097988	1.00[AMR][1000 genomes]
rs10099089	1.00[AMR][1000 genomes]
rs17475246	1.00[AMR][1000 genomes]
rs17475939	1.00[AMR][1000 genomes]
rs17475966	1.00[AMR][1000 genomes]
rs17476338	1.00[AMR][1000 genomes]
rs17476380	1.00[AMR][1000 genomes]
rs17476623	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476700	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17503962	1.00[AMR][1000 genomes]
rs17503990	1.00[AMR][1000 genomes]
rs17504018	1.00[AMR][1000 genomes]
rs17504736	1.00[AMR][1000 genomes]
rs17505086	1.00[AMR][1000 genomes]
rs17505304	1.00[AMR][1000 genomes]
rs17505513	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505610	1.00[AMR][1000 genomes]
rs17505784	0.98[AFR][1000 genomes]
rs17505910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445582	1.00[AMR][1000 genomes]
rs28592980	1.00[AMR][1000 genomes]
rs56043836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57174831	1.00[AMR][1000 genomes]
rs59593630	1.00[AMR][1000 genomes]
rs61306907	1.00[AMR][1000 genomes]
rs73704842	1.00[AMR][1000 genomes]
rs73704843	1.00[AMR][1000 genomes]
rs73704896	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119055200-119065400	Weak transcription	HepG2	liver
2	chr8:119056000-119066200	Weak transcription	Right Ventricle	heart
3	chr8:119057000-119068400	Weak transcription	Hela-S3	cervix
4	chr8:119057800-119065800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:119057800-119065800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:119061000-119066000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:119061200-119066000	Weak transcription	Small Intestine	intestine
8	chr8:119061600-119065800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:119062000-119066400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119062000-119067400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:119062000-119072800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:119062200-119066200	Weak transcription	Psoas Muscle	Psoas
13	chr8:119062200-119066200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:119062200-119068400	Weak transcription	Left Ventricle	heart
15	chr8:119062200-119068600	Weak transcription	Right Atrium	heart
16	chr8:119062200-119068600	Weak transcription	Stomach Mucosa	stomach
17	chr8:119062200-119068800	Weak transcription	Esophagus	oesophagus
18	chr8:119062200-119083600	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:119062600-119065600	Weak transcription	Fetal Intestine Large	intestine
20	chr8:119062800-119065400	Weak transcription	Liver	Liver
21	chr8:119062800-119085000	Weak transcription	Fetal Stomach	stomach
22	chr8:119063600-119066600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:119063800-119065400	Enhancers	HSMMtube	muscle
24	chr8:119063800-119065400	Genic enhancers	NHEK	skin
25	chr8:119063800-119066800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:119063800-119066800	Enhancers	NH-A	brain
27	chr8:119063800-119067000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr8:119064000-119065600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:119064000-119065600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:119064000-119066600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:119064000-119069400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:119064000-119070600	Enhancers	HMEC	breast
33	chr8:119064200-119065600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr8:119064200-119065800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr8:119064200-119066000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:119064200-119066600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:119064200-119066800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr8:119064400-119066000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:119064400-119067000	Enhancers	HSMM	muscle
40	chr8:119064400-119067400	Enhancers	Osteobl	bone
41	chr8:119064600-119065200	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr8:119064600-119065600	Enhancers	Stomach Smooth Muscle	stomach
43	chr8:119064600-119066200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr8:119064800-119065400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:119064800-119066200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:119064800-119066200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr8:119064800-119066200	Genic enhancers	NHDF-Ad	bronchial
48	chr8:119064800-119066400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr8:119064800-119066800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:119064800-119067000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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