Variant report

Variant	rs73704897
Chromosome Location	chr8:119061875-119061876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10097988	1.00[AMR][1000 genomes]
rs10099089	1.00[AMR][1000 genomes]
rs17475246	1.00[AMR][1000 genomes]
rs17475939	1.00[AMR][1000 genomes]
rs17475966	1.00[AMR][1000 genomes]
rs17476338	1.00[AMR][1000 genomes]
rs17476380	1.00[AMR][1000 genomes]
rs17476623	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476700	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17476924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17503962	1.00[AMR][1000 genomes]
rs17503990	1.00[AMR][1000 genomes]
rs17504018	1.00[AMR][1000 genomes]
rs17504736	1.00[AMR][1000 genomes]
rs17505086	1.00[AMR][1000 genomes]
rs17505304	1.00[AMR][1000 genomes]
rs17505513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505610	1.00[AMR][1000 genomes]
rs17505691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505784	0.98[AFR][1000 genomes]
rs17505910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445582	1.00[AMR][1000 genomes]
rs28592980	1.00[AMR][1000 genomes]
rs56043836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57174831	1.00[AMR][1000 genomes]
rs59593630	1.00[AMR][1000 genomes]
rs61306907	1.00[AMR][1000 genomes]
rs73704842	1.00[AMR][1000 genomes]
rs73704843	1.00[AMR][1000 genomes]
rs73704896	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119048600-119063800	Weak transcription	HSMMtube	muscle
2	chr8:119055200-119065400	Weak transcription	HepG2	liver
3	chr8:119056000-119066200	Weak transcription	Right Ventricle	heart
4	chr8:119057000-119062800	Enhancers	Fetal Lung	lung
5	chr8:119057000-119068400	Weak transcription	Hela-S3	cervix
6	chr8:119057800-119065800	Weak transcription	Fetal Intestine Small	intestine
7	chr8:119057800-119065800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:119058400-119062200	Enhancers	Ovary	ovary
9	chr8:119058600-119062000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:119058600-119062200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:119058600-119062800	Enhancers	NH-A	brain
12	chr8:119058600-119062800	Enhancers	NHLF	lung
13	chr8:119058800-119064600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:119058800-119065000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:119058800-119065000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:119059000-119062000	Enhancers	Osteobl	bone
17	chr8:119059200-119062200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:119059400-119062000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:119059400-119062000	Weak transcription	Lung	lung
20	chr8:119059400-119062400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:119059600-119062200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:119059600-119062800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:119059600-119065000	Weak transcription	Spleen	Spleen
24	chr8:119059800-119062000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:119060000-119062800	Enhancers	Liver	Liver
26	chr8:119060000-119062800	Enhancers	NHDF-Ad	bronchial
27	chr8:119060200-119064800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:119060400-119062000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:119060400-119062200	Enhancers	Stomach Mucosa	stomach
30	chr8:119060400-119062400	Enhancers	HMEC	breast
31	chr8:119060400-119062800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:119060400-119062800	Enhancers	A549	lung
33	chr8:119060400-119063000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:119060600-119062800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:119060600-119063800	Weak transcription	HSMM	muscle
36	chr8:119060600-119064800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:119061000-119062200	Enhancers	Primary T cells from cord blood	blood
38	chr8:119061000-119062200	Enhancers	Colon Smooth Muscle	Colon
39	chr8:119061000-119062600	Enhancers	Brain Angular Gyrus	brain
40	chr8:119061000-119066000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:119061200-119062000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:119061200-119062200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:119061200-119066000	Weak transcription	Small Intestine	intestine
44	chr8:119061400-119062400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:119061400-119062400	Enhancers	Brain Anterior Caudate	brain
46	chr8:119061400-119062800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr8:119061400-119062800	Enhancers	Fetal Stomach	stomach
48	chr8:119061600-119062000	Active TSS	Brain Cingulate Gyrus	brain
49	chr8:119061600-119062000	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr8:119061600-119062000	Flanking Active TSS	Stomach Smooth Muscle	stomach

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