Variant report

Variant	rs17505804
Chromosome Location	chr12:43330112-43330113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17505252	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17583519	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4307771	1.00[AFR][1000 genomes]
rs56198345	1.00[AFR][1000 genomes]
rs73125901	1.00[AFR][1000 genomes]
rs73127803	1.00[AFR][1000 genomes]
rs73127810	1.00[AFR][1000 genomes]
rs73129823	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43328800-43330200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:43329000-43330200	Enhancers	Fetal Lung	lung
3	chr12:43329000-43331000	Enhancers	HSMM	muscle
4	chr12:43329200-43330400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:43329200-43331000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:43329200-43331200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:43329400-43330200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:43329400-43330400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:43329400-43330400	Enhancers	HMEC	breast
10	chr12:43329600-43330200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:43329600-43330200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:43329600-43330200	Enhancers	Osteobl	bone
13	chr12:43330000-43331000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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