Variant report

Variant	rs4307771
Chromosome Location	chr2:213723819-213723820
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11181780	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17503905	0.84[EUR][1000 genomes]
rs17505252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505804	1.00[AFR][1000 genomes]
rs17583519	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs56198345	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73125901	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73127803	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73127810	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73129823	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73132724	0.83[EUR][1000 genomes]
rs73132730	0.84[EUR][1000 genomes]
rs7965097	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834528	chr2:213664188-213879061	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213715600-213728000	Weak transcription	Thymus	Thymus
2	chr2:213723400-213726600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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