Variant report

Variant	rs7965097
Chromosome Location	chr12:43288114-43288115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11181779	0.81[EUR][1000 genomes]
rs11181780	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11181781	0.81[EUR][1000 genomes]
rs12579550	0.81[EUR][1000 genomes]
rs17503905	0.88[EUR][1000 genomes]
rs17505252	0.81[AMR][1000 genomes]
rs4307771	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768465	0.81[EUR][1000 genomes]
rs56198345	0.95[EUR][1000 genomes]
rs61924595	0.81[EUR][1000 genomes]
rs61924598	0.81[EUR][1000 genomes]
rs7137637	0.81[EUR][1000 genomes]
rs7137649	0.81[EUR][1000 genomes]
rs7299764	0.81[EUR][1000 genomes]
rs73125901	0.95[EUR][1000 genomes]
rs73127803	0.95[EUR][1000 genomes]
rs73127810	0.95[EUR][1000 genomes]
rs73127873	0.81[EUR][1000 genomes]
rs73132724	0.86[EUR][1000 genomes]
rs73132730	0.88[EUR][1000 genomes]
rs7957314	0.81[EUR][1000 genomes]
rs7970967	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43286600-43288600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:43286800-43288200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:43286800-43288400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:43287000-43288400	Enhancers	Primary hematopoietic stem cells	blood
5	chr12:43287200-43288400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:43287800-43316600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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