Variant report

Variant	rs17508730
Chromosome Location	chr7:39752264-39752265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10231409	0.90[JPT][hapmap]
rs10486802	0.89[JPT][hapmap]
rs17171616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17416875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17507811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17509194	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3779203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56719666	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73377485	0.87[EUR][1000 genomes]
rs73381122	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73381129	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73387354	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796021	0.90[JPT][hapmap]
rs7799721	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39741200-39753000	Weak transcription	Spleen	Spleen
2	chr7:39748200-39752800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:39749000-39752800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:39750000-39753000	Weak transcription	Stomach Mucosa	stomach
5	chr7:39751600-39753000	Enhancers	Fetal Muscle Leg	muscle
6	chr7:39752200-39752400	Enhancers	Fetal Lung	lung
7	chr7:39752200-39752800	Enhancers	HUVEC	blood vessel
8	chr7:39752200-39753000	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links