Variant report

Variant	rs7796021
Chromosome Location	chr7:39761315-39761316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39630501..39633434-chr7:39759020..39762831,5	K562	blood:
2	chr7:39760057..39765659-chr7:39765782..39774778,12	K562	blood:
3	chr7:39716806..39718805-chr7:39760155..39761984,2	K562	blood:
4	chr7:39697844..39699829-chr7:39759514..39761645,2	K562	blood:
5	chr7:39663291..39665233-chr7:39760119..39761834,2	K562	blood:
6	chr10:99256788..99259033-chr7:39760134..39761993,2	K562	blood:
7	chr7:39747835..39755058-chr7:39757872..39764388,13	K562	blood:
8	chr7:39678848..39680622-chr7:39760404..39763010,2	K562	blood:
9	chr7:39732340..39735300-chr7:39760265..39762340,2	K562	blood:
10	chr7:39661377..39663200-chr7:39760354..39762194,2	K562	blood:
11	chr7:39660254..39665233-chr7:39756811..39764394,13	K562	blood:
12	chr7:39759344..39763475-chr7:39764953..39775706,19	K562	blood:
13	chr7:39760407..39761969-chr7:39866612..39869320,2	K562	blood:
14	chr7:39604771..39607441-chr7:39760385..39762790,2	K562	blood:
15	chr7:39745397..39755065-chr7:39757582..39762895,14	K562	blood:
16	chr7:39728709..39730955-chr7:39759969..39761928,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000188185	Chromatin interaction
ENSG00000241127	Chromatin interaction
ENSG00000006451	Chromatin interaction
ENSG00000227172	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10231409	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486802	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11770964	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666517	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668645	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171616	0.89[JPT][hapmap]
rs17416875	0.89[JPT][hapmap]
rs17507811	0.89[JPT][hapmap]
rs17508585	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17508730	0.90[JPT][hapmap]
rs2107707	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs34821005	0.85[EUR][1000 genomes]
rs3779203	0.90[JPT][hapmap]
rs62454689	0.88[EUR][1000 genomes]
rs6462943	0.84[EUR][1000 genomes]
rs7799721	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39758600-39761400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:39759400-39761800	Enhancers	Placenta	Placenta
3	chr7:39760000-39761800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:39760000-39761800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:39760800-39761400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:39760800-39762200	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:39760800-39762800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:39761000-39762600	Active TSS	K562	blood
9	chr7:39761000-39762800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:39761200-39761600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:39761200-39762000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:39761200-39762800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:39761200-39764400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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