Variant report

Variant	rs11770964
Chromosome Location	chr7:39744212-39744213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10231409	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486802	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12666517	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668645	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17508585	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107707	0.80[EUR][1000 genomes]
rs34821005	0.83[EUR][1000 genomes]
rs62454689	0.86[EUR][1000 genomes]
rs6462943	0.84[EUR][1000 genomes]
rs7796021	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799721	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39715200-39749400	Weak transcription	Aorta	Aorta
2	chr7:39727400-39747800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:39730600-39749200	Weak transcription	Ovary	ovary
4	chr7:39732000-39748000	Strong transcription	HUVEC	blood vessel
5	chr7:39732000-39749200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:39734200-39746200	Weak transcription	Fetal Kidney	kidney
7	chr7:39736600-39749400	Weak transcription	Fetal Heart	heart
8	chr7:39737400-39749800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:39737600-39748800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:39737800-39749400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:39737800-39749400	Weak transcription	Psoas Muscle	Psoas
12	chr7:39738000-39748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:39738000-39749200	Weak transcription	Fetal Brain Female	brain
14	chr7:39738000-39749400	Weak transcription	Placenta	Placenta
15	chr7:39738400-39744400	Weak transcription	HepG2	liver
16	chr7:39738400-39748400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:39738600-39744600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:39738600-39748800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:39738600-39748800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:39738600-39749200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:39739600-39749600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:39740200-39744800	Weak transcription	Brain Substantia Nigra	brain
23	chr7:39740200-39746200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:39740200-39747200	Weak transcription	Gastric	stomach
25	chr7:39740200-39748000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:39740200-39749200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:39740200-39749400	Weak transcription	Pancreas	Pancrea
28	chr7:39740200-39749400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:39740200-39749600	Weak transcription	Lung	lung
30	chr7:39740200-39752000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:39740400-39745000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:39740400-39745600	Weak transcription	Esophagus	oesophagus
33	chr7:39740400-39747400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:39740400-39749000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:39740400-39749600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:39740600-39748200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:39740600-39749400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:39740600-39749400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:39740800-39745800	Weak transcription	Liver	Liver
40	chr7:39740800-39746000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr7:39740800-39746000	Weak transcription	Left Ventricle	heart
42	chr7:39740800-39746000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:39740800-39747800	Weak transcription	Right Ventricle	heart
44	chr7:39740800-39748600	Weak transcription	Fetal Thymus	thymus
45	chr7:39740800-39749000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:39740800-39749200	Weak transcription	Brain Germinal Matrix	brain
47	chr7:39740800-39749200	Weak transcription	GM12878-XiMat	blood
48	chr7:39740800-39749200	Weak transcription	NHLF	lung
49	chr7:39740800-39749400	Weak transcription	Thymus	Thymus
50	chr7:39741000-39744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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