Variant report

Variant	rs17515447
Chromosome Location	chr14:33117103-33117104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33113217..33115499-chr14:33116104..33118179,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17506750	0.81[EUR][1000 genomes]
rs17515580	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs927063	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
3	chr14:33105000-33117200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart
5	chr14:33113400-33120400	Weak transcription	Fetal Heart	heart
6	chr14:33113800-33130600	Weak transcription	Right Ventricle	heart
7	chr14:33115000-33125600	Weak transcription	Aorta	Aorta
8	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
9	chr14:33116400-33117800	Enhancers	Brain Substantia Nigra	brain
10	chr14:33116400-33118400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:33116600-33117400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:33116600-33117800	Enhancers	Brain Hippocampus Middle	brain
13	chr14:33116600-33117800	Enhancers	Colon Smooth Muscle	Colon
14	chr14:33116600-33118400	Enhancers	NHDF-Ad	bronchial
15	chr14:33116600-33118600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:33116600-33118600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr14:33116800-33117400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:33116800-33118000	Enhancers	Brain Anterior Caudate	brain
19	chr14:33117000-33117200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:33117000-33117800	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:33117000-33118000	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:33117000-33125600	Weak transcription	Brain Angular Gyrus	brain

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