Variant report

Variant	rs17515580
Chromosome Location	chr14:33120493-33120494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11626569	0.87[MKK][hapmap]
rs17515447	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs927063	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart
2	chr14:33113800-33130600	Weak transcription	Right Ventricle	heart
3	chr14:33115000-33125600	Weak transcription	Aorta	Aorta
4	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
5	chr14:33117000-33125600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33117800-33124800	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:33117800-33125800	Weak transcription	Brain Substantia Nigra	brain
8	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:33118200-33122800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:33118400-33126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:33118600-33125800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:33118600-33125800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:33120400-33120600	Enhancers	Fetal Heart	heart
14	chr14:33120400-33121000	Strong transcription	Brain Anterior Caudate	brain
15	chr14:33120400-33121000	Strong transcription	Fetal Muscle Leg	muscle
16	chr14:33120400-33121200	Strong transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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