Variant report

Variant	rs17517624
Chromosome Location	chr4:122824591-122824592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002280	0.90[ASN][1000 genomes]
rs10857086	0.90[ASN][1000 genomes]
rs11098647	0.89[EUR][1000 genomes]
rs11732582	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs12499222	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs13105974	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13106485	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1532968	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2661553	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2661555	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2706791	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2706792	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2706793	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2706796	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28665553	0.90[ASN][1000 genomes]
rs4295291	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4519820	0.90[ASN][1000 genomes]
rs4833774	0.90[ASN][1000 genomes]
rs4995894	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6815050	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs6819870	0.90[ASN][1000 genomes]
rs6823686	0.83[ASN][1000 genomes]
rs6830128	0.89[ASN][1000 genomes]
rs6835864	0.90[EUR][1000 genomes]
rs6836290	0.90[ASN][1000 genomes]
rs6838198	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6841843	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs7661641	0.86[ASN][1000 genomes]
rs7672640	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs7690095	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs906493	0.82[CHB][hapmap]
rs9999982	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1803127	chr4:122806228-122830334	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1014729	chr4:122806228-122848966	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122813400-122860600	Weak transcription	Fetal Lung	lung
2	chr4:122821600-122857400	Weak transcription	Fetal Heart	heart

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