Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11098647	0.82[EUR][1000 genomes]
rs11732582	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs12499222	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs13105974	0.84[EUR][1000 genomes]
rs13106485	0.84[EUR][1000 genomes]
rs1532968	0.83[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs17517624	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs2661553	0.84[EUR][1000 genomes]
rs2661555	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs2706791	0.84[EUR][1000 genomes]
rs2706792	0.84[EUR][1000 genomes]
rs2706793	0.83[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs4292355	0.83[ASW][hapmap];0.82[CHB][hapmap];0.85[LWK][hapmap];0.81[MEX][hapmap];0.80[YRI][hapmap];0.80[ASN][1000 genomes]
rs4295291	0.84[EUR][1000 genomes]
rs4833237	0.80[ASN][1000 genomes]
rs4833780	0.90[GIH][hapmap];0.80[YRI][hapmap]
rs4995894	0.83[CEU][hapmap];0.90[CHB][hapmap];0.82[TSI][hapmap]
rs6835864	0.83[EUR][1000 genomes]
rs6838198	0.85[EUR][1000 genomes]
rs7672640	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7690095	0.84[EUR][1000 genomes]
rs906493	0.88[ASW][hapmap];0.84[YRI][hapmap]
rs970349	0.92[GIH][hapmap]
rs9999982	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122813400-122860600	Weak transcription	Fetal Lung	lung
2	chr4:122852200-122859400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:122853800-122860000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:122854000-122858200	Weak transcription	Gastric	stomach
5	chr4:122854400-122859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:122854400-122860000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:122856600-122860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:122857400-122861200	Enhancers	Fetal Heart	heart

Quick Search: