Variant report

Variant	rs17520554
Chromosome Location	chr1:226759861-226759862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226755240..226758570-chr1:226759106..226763916,5	K562	blood:

rs_ID	r²[population]
rs16846137	0.92[ASN][1000 genomes]
rs17520589	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17579954	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60520072	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226750000-226763200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:226755600-226762800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:226756200-226762000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:226756200-226762600	Weak transcription	Right Atrium	heart
5	chr1:226756600-226762400	Weak transcription	Right Ventricle	heart
6	chr1:226756600-226762800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:226756600-226764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
9	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:226756800-226762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:226757200-226763000	Weak transcription	Fetal Brain Female	brain
12	chr1:226757400-226764800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:226757800-226764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:226758400-226762600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:226758400-226763000	Weak transcription	Brain Anterior Caudate	brain
16	chr1:226758400-226764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:226758600-226762800	Weak transcription	Fetal Brain Male	brain
19	chr1:226759400-226760200	Enhancers	Fetal Muscle Leg	muscle
20	chr1:226759600-226760600	Enhancers	Fetal Muscle Trunk	muscle
21	chr1:226759600-226760800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:226759800-226760000	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:226759800-226760600	Enhancers	Colon Smooth Muscle	Colon

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