Variant report

Variant	rs17579954
Chromosome Location	chr1:226764539-226764540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226762291..226765130-chr1:226766414..226768720,3	K562	blood:
2	chr1:226763403..226765130-chr1:226766414..226768252,2	K562	blood:
3	chr1:226670505..226672311-chr1:226763715..226765421,2	K562	blood:
4	chr1:226764453..226766070-chr1:226766263..226768045,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12029429	1.00[CEU][hapmap]
rs17520554	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17520589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17520819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17580122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17580764	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55767921	0.85[AMR][1000 genomes]
rs56290706	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs58677448	0.85[AMR][1000 genomes]
rs603609	1.00[CHB][hapmap]
rs60520072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60706522	1.00[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226756600-226764600	Weak transcription	Brain Substantia Nigra	brain
2	chr1:226756600-226764800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:226757400-226764800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:226757800-226764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:226758400-226765200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:226762000-226764800	Enhancers	Brain Hippocampus Middle	brain
7	chr1:226762000-226764800	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:226762200-226765600	Enhancers	Colon Smooth Muscle	Colon
9	chr1:226762400-226764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:226762400-226765000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:226762600-226765000	Enhancers	Right Atrium	heart
12	chr1:226763000-226765600	Enhancers	Brain Anterior Caudate	brain
13	chr1:226763000-226777200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:226763200-226765000	Weak transcription	Fetal Brain Male	brain
15	chr1:226763400-226765200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:226763400-226767000	Weak transcription	Ovary	ovary
17	chr1:226763600-226765200	Weak transcription	Fetal Brain Female	brain
18	chr1:226763600-226765400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr1:226764000-226765200	Weak transcription	Brain Germinal Matrix	brain
20	chr1:226764000-226765200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:226764200-226764600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr1:226764400-226764800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:226764400-226764800	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:226764400-226764800	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr1:226764400-226765000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:226764400-226765400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:226764400-226765600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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