Variant report

Variant	rs17520819
Chromosome Location	chr1:226775924-226775925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12029429	1.00[CEU][hapmap]
rs17520589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17579954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17580122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17580764	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55767921	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56290706	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58677448	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs603609	1.00[CHB][hapmap]
rs60520072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60706522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708755	0.93[EUR][1000 genomes]
rs73098838	0.93[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226763000-226777200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:226765000-226790000	Weak transcription	Right Atrium	heart
3	chr1:226765600-226776800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:226765600-226777400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:226772000-226776000	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:226774400-226776800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:226774600-226776800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:226774800-226790200	Weak transcription	Fetal Intestine Small	intestine
9	chr1:226775200-226777600	Enhancers	Ovary	ovary
10	chr1:226775400-226776800	Enhancers	Stomach Smooth Muscle	stomach
11	chr1:226775400-226777600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:226775400-226778400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:226775600-226776600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:226775600-226776800	Enhancers	Spleen	Spleen
15	chr1:226775800-226777200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:226775800-226777400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:226775800-226777600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:226775800-226777600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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