Variant report

Variant	rs17521861
Chromosome Location	chr7:70709652-70709653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10434989	0.83[AMR][1000 genomes]
rs2158736	1.00[JPT][hapmap]
rs2867046	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4717586	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6960630	0.81[AMR][1000 genomes]
rs6974446	1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.86[AMR][1000 genomes]
rs6974582	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6977714	0.84[AMR][1000 genomes]
rs6980454	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7811880	0.87[ASW][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70701600-70720400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70702200-70713600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:70702200-70719600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70703600-70713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70703800-70713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:70704000-70709800	Weak transcription	Right Ventricle	heart
7	chr7:70704000-70713600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:70704200-70710200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70707200-70713600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70707600-70710600	Enhancers	Fetal Heart	heart
11	chr7:70708200-70710200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:70708800-70709800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:70709200-70713600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:70709400-70709800	Weak transcription	Left Ventricle	heart
15	chr7:70709400-70718600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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