Variant report

Variant	rs6974446
Chromosome Location	chr7:70705422-70705423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70700080..70701840-chr7:70703874..70706037,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10434989	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10950252	0.83[CHD][hapmap]
rs17521861	1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.86[AMR][1000 genomes]
rs1922519	0.84[GIH][hapmap]
rs2158736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2867046	1.00[JPT][hapmap]
rs4717586	1.00[JPT][hapmap]
rs6960630	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6974582	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6974927	0.81[AMR][1000 genomes]
rs6977714	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980454	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7811880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9654905	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70700600-70705600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr7:70701400-70706800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:70701600-70720400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:70702200-70705600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr7:70702200-70713600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70702200-70719600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:70703600-70713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70703800-70713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:70704000-70706000	Weak transcription	Aorta	Aorta
10	chr7:70704000-70709800	Weak transcription	Right Ventricle	heart
11	chr7:70704000-70713600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:70704200-70708800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:70704200-70708800	Weak transcription	Left Ventricle	heart
14	chr7:70704200-70710200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70704400-70708600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:70704800-70705600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:70704800-70706400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:70704800-70709000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:70704800-70709000	Weak transcription	Ovary	ovary
20	chr7:70705000-70708800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:70705200-70705800	Enhancers	Fetal Heart	heart
22	chr7:70705200-70706000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:70705200-70708400	Weak transcription	Fetal Lung	lung
24	chr7:70705200-70708600	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:70705200-70708800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:70705200-70708800	Weak transcription	Fetal Brain Male	brain
27	chr7:70705400-70708600	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:70705400-70709200	Weak transcription	HSMMtube	muscle

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