Variant report

Variant	rs1922519
Chromosome Location	chr7:70701316-70701317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70700080..70701840-chr7:70703874..70706037,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2906272	1.00[YRI][hapmap]
rs2960867	1.00[YRI][hapmap]
rs2960873	1.00[YRI][hapmap]
rs6974446	0.84[GIH][hapmap]
rs7811880	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70693200-70701600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:70695600-70701400	Weak transcription	Pancreas	Pancrea
4	chr7:70698400-70703400	Weak transcription	Right Ventricle	heart
5	chr7:70698800-70701400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70700400-70701400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:70700400-70704800	Enhancers	Ovary	ovary
8	chr7:70700600-70701600	Enhancers	Colon Smooth Muscle	Colon
9	chr7:70700600-70701600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr7:70700600-70702200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:70700600-70702200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:70700600-70702200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:70700600-70702800	Enhancers	Left Ventricle	heart
14	chr7:70700600-70705400	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70700600-70705600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:70700800-70702000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:70700800-70702400	Enhancers	Psoas Muscle	Psoas
18	chr7:70700800-70704400	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:70700800-70704800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:70701000-70701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:70701200-70702000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:70701200-70703800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:70701200-70704000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:70701200-70704600	Enhancers	Fetal Stomach	stomach
25	chr7:70701200-70705000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:70701200-70705200	Enhancers	Rectal Smooth Muscle	rectum

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