Variant report

Variant	rs2906272
Chromosome Location	chr7:70887033-70887034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10269635	1.00[YRI][hapmap]
rs10274514	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10277064	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs1922519	1.00[YRI][hapmap]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960872	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2960873	1.00[YRI][hapmap]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:70874800-70889000	Weak transcription	HSMMtube	muscle
4	chr7:70879400-70899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70880000-70891000	Weak transcription	Right Atrium	heart
6	chr7:70880000-70897600	Weak transcription	Right Ventricle	heart
7	chr7:70880200-70888800	Weak transcription	Left Ventricle	heart
8	chr7:70880600-70888000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70880600-70888000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr7:70880800-70889200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr7:70880800-70899200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70881000-70887600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:70881000-70901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:70881200-70888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:70883400-70889400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:70883600-70889000	Weak transcription	Fetal Lung	lung
17	chr7:70885600-70888200	ZNF genes & repeats	Fetal Stomach	stomach
18	chr7:70885800-70887800	Strong transcription	Ovary	ovary
19	chr7:70886200-70887400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70886200-70888200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70886200-70903600	Weak transcription	Aorta	Aorta
22	chr7:70886400-70887600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:70886400-70888000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:70886400-70890600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:70886600-70892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:70886800-70887600	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:70886800-70893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:70887000-70887400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:70887000-70888000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links