Variant report

Variant	rs10263758
Chromosome Location	chr7:70920009-70920010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10267747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
3	chr7:70908400-70922400	Weak transcription	Fetal Stomach	stomach
4	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
5	chr7:70908600-70921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70908600-70923000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:70909200-70922200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70912200-70922000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70915800-70920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70915800-70921600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:70916000-70926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70918400-70920200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70918400-70921600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:70918400-70921600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:70918400-70921600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:70918400-70921600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:70919000-70922000	Weak transcription	Fetal Heart	heart
18	chr7:70919200-70920200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:70920000-70920400	Enhancers	Spleen	Spleen
20	chr7:70920000-70921200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:70920000-70922800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:70920000-70925200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links