Variant report

Variant	rs28729790
Chromosome Location	chr7:70942222-70942223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70938200-70944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:70940200-70944800	Weak transcription	Fetal Lung	lung
3	chr7:70940200-70945400	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:70940200-70951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70940600-70942800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:70940600-70944400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:70940600-70946000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:70940800-70943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70941400-70943600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:70941400-70943600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:70941400-70944200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70941400-70945600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:70941400-70953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:70941800-70943600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:70942000-70942400	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links