Variant report

Variant	rs28628858
Chromosome Location	chr7:70999474-70999475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70983000-71007800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:70986800-71006600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70988000-70999800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:70988000-71003400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70988000-71023800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:70998600-71001200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:70999000-71001800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links