Variant report

Variant	rs10156117
Chromosome Location	chr7:70939216-70939217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70934800-70939400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:70935000-70939400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:70935200-70939400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:70935800-70941400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70936400-70939600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:70936600-70939800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70937000-70939600	Weak transcription	Fetal Lung	lung
8	chr7:70937400-70939800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:70937800-70939400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:70938000-70939800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:70938200-70944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70939000-70939600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:70939200-70939600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:70939200-70939600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:70939200-70939600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:70939200-70939800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:70939200-70940200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links