Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10269635	1.00[YRI][hapmap]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906271	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2906272	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2960873	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70850400-70860000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:70850600-70859400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:70850600-70860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:70850800-70862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:70854000-70860600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70854800-70868400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:70855000-70860200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70856000-70862200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70856200-70862400	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:70856400-70867800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:70857600-70862400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:70857800-70861400	Weak transcription	Left Ventricle	heart
14	chr7:70858800-70860800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:70858800-70864200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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