Variant report

Variant	rs10269635
Chromosome Location	chr7:70903787-70903788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10267747	1.00[YRI][hapmap]
rs10277064	1.00[YRI][hapmap]
rs2906271	1.00[YRI][hapmap]
rs2906272	1.00[YRI][hapmap]
rs2960867	1.00[YRI][hapmap]
rs2960872	1.00[YRI][hapmap]
rs2960873	1.00[YRI][hapmap]
rs2960875	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70889600-70907600	Weak transcription	Fetal Lung	lung
3	chr7:70891800-70907400	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:70898400-70907800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:70899000-70904600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70899600-70909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:70902000-70907800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:70902600-70907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:70902600-70907600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:70902600-70907600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:70902600-70907600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:70902800-70907400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:70902800-70907600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:70902800-70907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70903000-70907200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:70903000-70907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:70903400-70907600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:70903400-70907600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:70903600-70912000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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