Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10156117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269635	1.00[YRI][hapmap]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]
rs7805349	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:70961800-70969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:70962800-70967200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70962800-70967200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:70962800-70971800	Weak transcription	Fetal Lung	lung
7	chr7:70963000-70967200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:70963000-70967200	Weak transcription	Ovary	ovary
9	chr7:70963000-70971600	Weak transcription	Fetal Heart	heart
10	chr7:70963000-70972400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:70963000-70972600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:70963400-70972400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:70963600-70972400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:70963600-70980400	Weak transcription	Aorta	Aorta
15	chr7:70965200-70972400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:70966600-70968800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:70966800-70968000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:70966800-70968200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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