Variant report

Variant	rs28401373
Chromosome Location	chr7:70962105-70962106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:70948200-70962200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:70953600-70962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:70954600-70962200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:70955000-70962200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70955000-70962400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:70955400-70962400	Weak transcription	Fetal Heart	heart
11	chr7:70956800-70962400	Weak transcription	Fetal Lung	lung
12	chr7:70960600-70963400	Enhancers	Fetal Muscle Trunk	muscle
13	chr7:70960600-70963800	Enhancers	Fetal Muscle Leg	muscle
14	chr7:70960800-70962400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:70960800-70962800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:70960800-70965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:70961000-70962200	Weak transcription	Left Ventricle	heart
18	chr7:70961000-70962400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:70961800-70969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70962000-70962600	Enhancers	Ovary	ovary
21	chr7:70962000-70962800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:70962000-70962800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:70962000-70962800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr7:70962000-70962800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr7:70962000-70963000	Enhancers	Fetal Stomach	stomach

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