Variant report

Variant	rs10440952
Chromosome Location	chr7:70926657-70926658
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10277064	1.00[AMR][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28595875	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
2	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
3	chr7:70921600-70927000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:70923400-70927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:70923400-70928200	Weak transcription	Ovary	ovary
6	chr7:70923600-70927000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:70923800-70926800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:70923800-70927200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:70923800-70927200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:70923800-70927400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:70923800-70935200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:70924000-70928800	Weak transcription	Right Ventricle	heart
13	chr7:70925400-70929600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:70926000-70927200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70926000-70927400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:70926200-70927200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:70926200-70927200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:70926200-70927200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:70926200-70927400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:70926400-70926800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70926400-70928200	Weak transcription	Fetal Heart	heart
22	chr7:70926600-70926800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:70926600-70927000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:70926600-70927000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:70926600-70927000	Enhancers	Lung	lung
26	chr7:70926600-70927200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:70926600-70927200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:70926600-70927200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:70926600-70927200	Enhancers	Left Ventricle	heart

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