Variant report

Variant	rs28595875
Chromosome Location	chr7:70908310-70908311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10156117	1.00[AMR][1000 genomes]
rs10240362	1.00[AMR][1000 genomes]
rs10262784	1.00[ASN][1000 genomes]
rs10263758	1.00[AMR][1000 genomes]
rs10267747	1.00[AMR][1000 genomes]
rs10274514	1.00[AMR][1000 genomes]
rs10274606	1.00[ASN][1000 genomes]
rs10277064	1.00[AMR][1000 genomes]
rs10440952	1.00[AMR][1000 genomes]
rs11974045	1.00[ASN][1000 genomes]
rs11979445	1.00[ASN][1000 genomes]
rs28401373	1.00[AMR][1000 genomes]
rs28434266	1.00[AMR][1000 genomes]
rs28628858	1.00[AMR][1000 genomes]
rs28631402	1.00[AMR][1000 genomes]
rs28729790	1.00[AMR][1000 genomes]
rs28733786	1.00[AMR][1000 genomes]
rs28874979	1.00[AMR][1000 genomes]
rs2906260	1.00[AMR][1000 genomes]
rs2906271	1.00[AMR][1000 genomes]
rs2906272	1.00[AMR][1000 genomes]
rs2906274	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2906275	1.00[AMR][1000 genomes]
rs2960867	1.00[AMR][1000 genomes]
rs2960872	1.00[AMR][1000 genomes]
rs2960874	1.00[AMR][1000 genomes]
rs2960875	1.00[AMR][1000 genomes]
rs2960879	1.00[AMR][1000 genomes]
rs4595007	1.00[ASN][1000 genomes]
rs57162295	1.00[ASN][1000 genomes]
rs6961004	1.00[ASN][1000 genomes]
rs73360199	1.00[ASN][1000 genomes]
rs73362012	1.00[ASN][1000 genomes]
rs73362022	1.00[ASN][1000 genomes]
rs73362085	1.00[ASN][1000 genomes]
rs73362101	1.00[ASN][1000 genomes]
rs73363706	1.00[ASN][1000 genomes]
rs73363709	1.00[ASN][1000 genomes]
rs73363713	1.00[ASN][1000 genomes]
rs7808680	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70899600-70909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70903600-70912000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
5	chr7:70907200-70908600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:70907400-70908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:70907400-70908600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:70907400-70908600	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:70907400-70908600	Enhancers	Fetal Muscle Leg	muscle
10	chr7:70907400-70908600	Flanking Active TSS	Dnd41	blood
11	chr7:70907400-70909600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:70907600-70908400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:70907600-70908400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:70907600-70908400	Enhancers	Fetal Heart	heart
15	chr7:70907600-70908400	Enhancers	Fetal Kidney	kidney
16	chr7:70907600-70908400	Enhancers	Fetal Lung	lung
17	chr7:70907600-70908400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr7:70907600-70908600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:70907600-70908600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr7:70907600-70908600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70907600-70908600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:70907600-70908600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:70907600-70908600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:70907600-70908600	Enhancers	Fetal Thymus	thymus
25	chr7:70907600-70908600	Enhancers	HSMM	muscle
26	chr7:70907600-70908800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:70907600-70909200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr7:70907600-70909600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:70907800-70908400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:70907800-70908400	Enhancers	Fetal Stomach	stomach
31	chr7:70907800-70908600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr7:70907800-70908600	Enhancers	Fetal Muscle Trunk	muscle
33	chr7:70908000-70908400	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr7:70908000-70908600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:70908000-70909200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:70908200-70908400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr7:70908200-70908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:70908200-70909400	Enhancers	Thymus	Thymus
39	chr7:70908200-70909400	Enhancers	HSMMtube	muscle

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