Variant report

Variant	rs11974045
Chromosome Location	chr7:70838298-70838299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10262784	1.00[ASN][1000 genomes]
rs10274606	1.00[ASN][1000 genomes]
rs11971278	1.00[AMR][1000 genomes]
rs11971711	1.00[AMR][1000 genomes]
rs11973091	1.00[AMR][1000 genomes]
rs11976034	1.00[AMR][1000 genomes]
rs11979445	1.00[ASN][1000 genomes]
rs11982964	1.00[AMR][1000 genomes]
rs28595875	1.00[ASN][1000 genomes]
rs2906274	1.00[ASN][1000 genomes]
rs4595007	1.00[ASN][1000 genomes]
rs57162295	1.00[ASN][1000 genomes]
rs58768169	1.00[AMR][1000 genomes]
rs59592502	1.00[AMR][1000 genomes]
rs60204871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961004	1.00[ASN][1000 genomes]
rs73354290	1.00[AMR][1000 genomes]
rs73356047	1.00[AMR][1000 genomes]
rs73356056	1.00[AMR][1000 genomes]
rs73356066	1.00[AMR][1000 genomes]
rs73358126	1.00[AMR][1000 genomes]
rs73358129	1.00[AMR][1000 genomes]
rs73358132	1.00[AMR][1000 genomes]
rs73358163	1.00[AMR][1000 genomes]
rs73358191	1.00[AMR][1000 genomes]
rs73360114	1.00[AMR][1000 genomes]
rs73360128	1.00[AMR][1000 genomes]
rs73360129	1.00[AMR][1000 genomes]
rs73360132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360161	0.88[AFR][1000 genomes]
rs73360199	1.00[ASN][1000 genomes]
rs73362012	1.00[ASN][1000 genomes]
rs73362022	1.00[ASN][1000 genomes]
rs73362085	1.00[ASN][1000 genomes]
rs73362101	1.00[ASN][1000 genomes]
rs73363706	1.00[ASN][1000 genomes]
rs73363709	1.00[ASN][1000 genomes]
rs73363713	1.00[ASN][1000 genomes]
rs7808680	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70837600-70844800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:70837800-70838800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr7:70837800-70839800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70838200-70838400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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