Variant report

Variant	rs73356056
Chromosome Location	chr7:70762960-70762961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11971278	1.00[AMR][1000 genomes]
rs11971711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974045	1.00[AMR][1000 genomes]
rs11976034	1.00[AMR][1000 genomes]
rs11982964	1.00[AMR][1000 genomes]
rs11983542	1.00[AMR][1000 genomes]
rs58768169	1.00[AMR][1000 genomes]
rs59592502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204871	1.00[AMR][1000 genomes]
rs73354290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358126	1.00[AMR][1000 genomes]
rs73358129	1.00[AMR][1000 genomes]
rs73358132	1.00[AMR][1000 genomes]
rs73358163	1.00[AMR][1000 genomes]
rs73358191	1.00[AMR][1000 genomes]
rs73360114	1.00[AMR][1000 genomes]
rs73360128	1.00[AMR][1000 genomes]
rs73360129	1.00[AMR][1000 genomes]
rs73360132	1.00[AMR][1000 genomes]
rs73360136	1.00[AMR][1000 genomes]
rs73360139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70755800-70763800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70756000-70764000	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:70756000-70765000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70756000-70765200	Weak transcription	Fetal Heart	heart
9	chr7:70758800-70765200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:70760400-70765200	Weak transcription	Ovary	ovary
11	chr7:70760400-70765400	Weak transcription	Fetal Stomach	stomach
12	chr7:70762800-70763000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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