Variant report

Variant	rs11973091
Chromosome Location	chr7:70768611-70768612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70762205..70764072-chr7:70767417..70770414,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11971278	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs11971711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974045	1.00[AMR][1000 genomes]
rs11976034	1.00[AMR][1000 genomes]
rs11982964	1.00[AMR][1000 genomes]
rs11983542	1.00[AMR][1000 genomes]
rs58768169	1.00[AMR][1000 genomes]
rs59592502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204871	1.00[AMR][1000 genomes]
rs73354290	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358126	1.00[AMR][1000 genomes]
rs73358129	1.00[AMR][1000 genomes]
rs73358132	1.00[AMR][1000 genomes]
rs73358163	1.00[AMR][1000 genomes]
rs73358191	1.00[AMR][1000 genomes]
rs73360114	1.00[AMR][1000 genomes]
rs73360128	1.00[AMR][1000 genomes]
rs73360129	1.00[AMR][1000 genomes]
rs73360132	1.00[AMR][1000 genomes]
rs73360136	1.00[AMR][1000 genomes]
rs73360139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:70764000-70768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70765800-70769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:70766200-70769200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:70766200-70772400	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:70767600-70768800	Weak transcription	Ovary	ovary
10	chr7:70767800-70769600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:70768200-70769000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:70768200-70769200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:70768200-70769400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:70768200-70769400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:70768200-70769400	Enhancers	NH-A	brain
16	chr7:70768200-70769600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:70768200-70769600	Enhancers	HSMMtube	muscle
18	chr7:70768200-70769800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:70768400-70769000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:70768400-70769200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:70768400-70769200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:70768400-70769400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:70768400-70769400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr7:70768400-70769600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:70768400-70769600	Enhancers	Fetal Stomach	stomach
26	chr7:70768400-70769600	Enhancers	Rectal Smooth Muscle	rectum
27	chr7:70768600-70769200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr7:70768600-70769200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:70768600-70769200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:70768600-70769400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:70768600-70769400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr7:70768600-70769400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr7:70768600-70769400	Enhancers	Colon Smooth Muscle	Colon
34	chr7:70768600-70769600	Enhancers	Fetal Kidney	kidney
35	chr7:70768600-70769600	Enhancers	Fetal Lung	lung

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