Variant report

Variant	rs73358163
Chromosome Location	chr7:70809494-70809495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11971278	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971711	1.00[AMR][1000 genomes]
rs11973091	1.00[AMR][1000 genomes]
rs11974045	1.00[AMR][1000 genomes]
rs11976034	1.00[AMR][1000 genomes]
rs11982964	1.00[AMR][1000 genomes]
rs58768169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59592502	1.00[AMR][1000 genomes]
rs60204871	1.00[AMR][1000 genomes]
rs73354290	1.00[AMR][1000 genomes]
rs73356047	1.00[AMR][1000 genomes]
rs73356056	1.00[AMR][1000 genomes]
rs73356066	1.00[AMR][1000 genomes]
rs73358126	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358191	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360129	1.00[AMR][1000 genomes]
rs73360132	1.00[AMR][1000 genomes]
rs73360136	1.00[AMR][1000 genomes]
rs73360139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70801600-70812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:70805000-70813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70805200-70813400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70805600-70813200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70805600-70813200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70807000-70812600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:70807400-70810200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70808200-70813400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:70808600-70813800	Weak transcription	Fetal Brain Male	brain
10	chr7:70809400-70813200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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