Variant report

Variant	rs73354290
Chromosome Location	chr7:70744918-70744919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11971278	1.00[AMR][1000 genomes]
rs11971711	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973091	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974045	1.00[AMR][1000 genomes]
rs11976034	1.00[AMR][1000 genomes]
rs11982964	1.00[AMR][1000 genomes]
rs11983542	1.00[AMR][1000 genomes]
rs58768169	1.00[AMR][1000 genomes]
rs59592502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204871	1.00[AMR][1000 genomes]
rs73356047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73358126	1.00[AMR][1000 genomes]
rs73358129	1.00[AMR][1000 genomes]
rs73358132	1.00[AMR][1000 genomes]
rs73358163	1.00[AMR][1000 genomes]
rs73358191	1.00[AMR][1000 genomes]
rs73360114	1.00[AMR][1000 genomes]
rs73360128	1.00[AMR][1000 genomes]
rs73360129	1.00[AMR][1000 genomes]
rs73360132	1.00[AMR][1000 genomes]
rs73360136	1.00[AMR][1000 genomes]
rs73360139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70745400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
3	chr7:70733200-70747000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70735200-70747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70736400-70747200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:70739600-70745800	Weak transcription	Right Ventricle	heart
7	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70740000-70745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
10	chr7:70741200-70750600	Weak transcription	Ovary	ovary
11	chr7:70742600-70747000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:70743400-70745600	Weak transcription	Aorta	Aorta
13	chr7:70743600-70750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:70743800-70745200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:70743800-70745400	Weak transcription	Fetal Heart	heart
16	chr7:70744000-70747000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:70744800-70746800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links