Variant report

Variant	rs57162295
Chromosome Location	chr7:70852597-70852598
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10262784	1.00[ASN][1000 genomes]
rs10274606	1.00[ASN][1000 genomes]
rs11974045	1.00[ASN][1000 genomes]
rs11979445	1.00[ASN][1000 genomes]
rs28595875	1.00[ASN][1000 genomes]
rs2906274	1.00[ASN][1000 genomes]
rs4595007	1.00[ASN][1000 genomes]
rs59245359	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6961004	1.00[ASN][1000 genomes]
rs73360149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360161	1.00[AMR][1000 genomes]
rs73360199	1.00[ASN][1000 genomes]
rs73362012	1.00[ASN][1000 genomes]
rs73362022	1.00[ASN][1000 genomes]
rs73362085	1.00[ASN][1000 genomes]
rs73362101	1.00[ASN][1000 genomes]
rs73363706	1.00[ASN][1000 genomes]
rs73363709	1.00[ASN][1000 genomes]
rs73363713	1.00[ASN][1000 genomes]
rs7808680	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70841000-70853200	Weak transcription	Ovary	ovary
2	chr7:70847800-70852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:70850400-70852800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:70850400-70853000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70850400-70853800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:70850400-70857200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:70850400-70860000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:70850600-70853000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:70850600-70853200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:70850600-70855400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:70850600-70857800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:70850600-70859400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:70850600-70860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:70850800-70853200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:70850800-70854200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:70850800-70862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:70851200-70853000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:70851400-70854600	Weak transcription	Fetal Heart	heart
19	chr7:70851800-70852600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:70852000-70857000	Weak transcription	Aorta	Aorta

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