Variant report

Variant	rs6961004
Chromosome Location	chr7:70973955-70973956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10257471	0.89[EUR][1000 genomes]
rs10257562	1.00[EUR][1000 genomes]
rs10262784	1.00[ASN][1000 genomes]
rs10274606	1.00[ASN][1000 genomes]
rs11974045	1.00[ASN][1000 genomes]
rs11979445	1.00[ASN][1000 genomes]
rs28595875	1.00[ASN][1000 genomes]
rs2906274	1.00[ASN][1000 genomes]
rs34336498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4410780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4421255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4595007	1.00[ASN][1000 genomes]
rs57162295	1.00[ASN][1000 genomes]
rs57624738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59045355	1.00[EUR][1000 genomes]
rs6460660	1.00[EUR][1000 genomes]
rs6949362	1.00[EUR][1000 genomes]
rs73360199	1.00[ASN][1000 genomes]
rs73362012	1.00[ASN][1000 genomes]
rs73362022	1.00[ASN][1000 genomes]
rs73362085	1.00[ASN][1000 genomes]
rs73362101	1.00[ASN][1000 genomes]
rs73363706	1.00[ASN][1000 genomes]
rs73363709	1.00[ASN][1000 genomes]
rs73363713	1.00[ASN][1000 genomes]
rs7808680	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70963600-70980400	Weak transcription	Aorta	Aorta
2	chr7:70967600-70979200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:70967800-70982800	Weak transcription	Ovary	ovary
4	chr7:70970600-70975400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70970600-70976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:70971800-70974400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70972000-70974000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:70972400-70974000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:70972400-70974000	Enhancers	Fetal Muscle Trunk	muscle
10	chr7:70972400-70974000	Enhancers	Fetal Muscle Leg	muscle
11	chr7:70972400-70974200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:70972400-70974600	Enhancers	Fetal Brain Male	brain
13	chr7:70973200-70974200	Weak transcription	Fetal Brain Female	brain
14	chr7:70973200-70978800	Weak transcription	Fetal Stomach	stomach
15	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:70973400-70974200	Weak transcription	HSMMtube	muscle
17	chr7:70973400-70976200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:70973400-70979000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:70973600-70974000	Enhancers	Colon Smooth Muscle	Colon
20	chr7:70973600-70976800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70973600-70978800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:70973800-70979200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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