Variant report

Variant	rs6460660
Chromosome Location	chr7:70977585-70977586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10257471	0.89[EUR][1000 genomes]
rs10257562	1.00[EUR][1000 genomes]
rs34336498	1.00[EUR][1000 genomes]
rs4410780	1.00[EUR][1000 genomes]
rs4421255	1.00[EUR][1000 genomes]
rs57624738	1.00[EUR][1000 genomes]
rs59045355	1.00[EUR][1000 genomes]
rs6949362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961004	1.00[EUR][1000 genomes]
rs7802334	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70963600-70980400	Weak transcription	Aorta	Aorta
2	chr7:70967600-70979200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:70967800-70982800	Weak transcription	Ovary	ovary
4	chr7:70973200-70978800	Weak transcription	Fetal Stomach	stomach
5	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70973400-70979000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:70973600-70978800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70973800-70979200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:70974000-70981800	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:70974200-70979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:70976600-70979000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:70976600-70979200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:70976600-70985000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:70976800-70977600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70977400-70978000	Enhancers	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links