Variant report

Variant	rs34336498
Chromosome Location	chr7:70980974-70980975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10257471	0.89[EUR][1000 genomes]
rs10257562	1.00[EUR][1000 genomes]
rs4410780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4421255	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57624738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59045355	1.00[EUR][1000 genomes]
rs6460660	1.00[EUR][1000 genomes]
rs6949362	1.00[EUR][1000 genomes]
rs6961004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70967800-70982800	Weak transcription	Ovary	ovary
2	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:70974000-70981800	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:70976600-70985000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70979000-70981600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr7:70979000-70982800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr7:70980400-70982000	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr7:70980400-70982400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70980400-70985600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:70980400-70986600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:70980600-70985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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