Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10216049	1.00[CEU][hapmap]
rs10241279	1.00[CEU][hapmap]
rs10245173	1.00[CEU][hapmap]
rs10257471	0.89[EUR][1000 genomes]
rs10257562	1.00[EUR][1000 genomes]
rs10258157	1.00[CEU][hapmap]
rs10267558	1.00[CEU][hapmap]
rs10272342	1.00[CEU][hapmap]
rs10278132	1.00[CEU][hapmap]
rs11764267	1.00[CEU][hapmap]
rs11976077	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs12540623	1.00[CEU][hapmap]
rs17143818	1.00[MEX][hapmap]
rs2960870	1.00[CEU][hapmap]
rs34336498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4410780	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57624738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584631	1.00[MEX][hapmap]
rs59045355	1.00[EUR][1000 genomes]
rs6460660	1.00[EUR][1000 genomes]
rs6949362	1.00[EUR][1000 genomes]
rs6961004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783170	0.90[YRI][hapmap]
rs917111	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:70983000-70992800	Weak transcription	Ovary	ovary
3	chr7:70983000-71007800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:70986400-70992600	Weak transcription	Fetal Brain Male	brain
5	chr7:70986800-71006600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70987400-70998400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70988000-70993200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70988000-70999800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70988000-71003400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70988000-71023800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:70989600-70993800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:70990800-70996600	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:70992000-70993400	Enhancers	Fetal Lung	lung

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