Variant report

Variant	rs7783170
Chromosome Location	chr7:70984103-70984104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11976077	0.90[YRI][hapmap]
rs4421255	0.90[YRI][hapmap]
rs6460661	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:70976600-70985000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:70980400-70985600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:70980400-70986600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:70980600-70985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70981000-70986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:70982400-70986000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:70983000-70985600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:70983000-70985600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:70983000-70992800	Weak transcription	Ovary	ovary
11	chr7:70983000-71007800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:70983200-70987800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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