Variant report

Variant	rs10216049
Chromosome Location	chr7:70874696-70874697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10224696	1.00[GIH][hapmap]
rs10241279	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10245173	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs10258157	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs10267558	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10272342	1.00[CEU][hapmap]
rs10278132	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11764267	1.00[CEU][hapmap]
rs11976077	1.00[CEU][hapmap]
rs12540623	1.00[CEU][hapmap]
rs12540683	1.00[GIH][hapmap]
rs2068591	0.83[EUR][1000 genomes]
rs2960870	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4421255	1.00[CEU][hapmap]
rs4719098	1.00[CEU][hapmap]
rs73362017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs917111	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70867600-70881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:70868200-70881800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:70868800-70882200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70869000-70875400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70869200-70880800	Weak transcription	Ovary	ovary
8	chr7:70870200-70880600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70870400-70880600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:70870400-70880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:70870400-70880800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70873800-70879400	Weak transcription	Fetal Heart	heart
13	chr7:70874200-70875000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:70874400-70874800	ZNF genes & repeats	HSMMtube	muscle
16	chr7:70874400-70875000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70874400-70875000	ZNF genes & repeats	Fetal Lung	lung
18	chr7:70874600-70875000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
19	chr7:70874600-70880800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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