Variant report

Variant	rs12540683
Chromosome Location	chr7:70820671-70820672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10216049	1.00[GIH][hapmap]
rs10224696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10252095	0.97[EUR][1000 genomes]
rs10281560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532676	0.97[EUR][1000 genomes]
rs12699009	0.92[TSI][hapmap]
rs12699012	0.89[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12699013	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12699032	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17143419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2707422	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34702051	0.86[EUR][1000 genomes]
rs35182494	0.97[EUR][1000 genomes]
rs56340632	0.97[EUR][1000 genomes]
rs57307767	0.81[ASN][1000 genomes]
rs62462185	0.97[EUR][1000 genomes]
rs62462209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6955324	0.81[ASN][1000 genomes]
rs71549400	0.97[EUR][1000 genomes]
rs73358169	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73358172	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7799967	0.92[TSI][hapmap]
rs7803373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs917111	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70821800	Weak transcription	Pancreas	Pancrea
2	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70814800-70829400	Weak transcription	Ovary	ovary
4	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
5	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:70819000-70828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70820600-70825600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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