Variant report

Variant	rs7799967
Chromosome Location	chr7:70767702-70767703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70762205..70764072-chr7:70767417..70770414,2	K562	blood:
2	chr7:70766833..70768385-chr7:70770081..70772817,2	K562	blood:

Variant related genes	Relation type
ENSG00000265878	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224696	0.92[TSI][hapmap]
rs10263419	0.88[EUR][1000 genomes]
rs11979633	1.00[GIH][hapmap];0.83[JPT][hapmap]
rs11979730	1.00[GIH][hapmap];0.83[JPT][hapmap]
rs12532253	0.85[EUR][1000 genomes]
rs12540683	0.92[TSI][hapmap]
rs12699007	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs12699008	0.88[EUR][1000 genomes]
rs12699009	0.80[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12699010	0.88[EUR][1000 genomes]
rs12699011	0.88[EUR][1000 genomes]
rs12699012	0.92[TSI][hapmap]
rs12699032	0.92[TSI][hapmap]
rs17137550	1.00[GIH][hapmap];0.83[JPT][hapmap]
rs1882573	0.88[EUR][1000 genomes]
rs1922526	0.83[CHD][hapmap]
rs4305790	0.88[EUR][1000 genomes]
rs4323379	0.88[EUR][1000 genomes]
rs4719103	1.00[JPT][hapmap]
rs58203463	0.97[ASN][1000 genomes]
rs6949288	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7799967	FZD9	cis	parietal	SCAN
rs7799967	CALN1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70764000-70768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:70765600-70768200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:70765600-70768400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:70765800-70768200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:70765800-70768200	Weak transcription	HSMMtube	muscle
11	chr7:70765800-70768400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:70765800-70768400	Weak transcription	Fetal Stomach	stomach
13	chr7:70765800-70768400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:70765800-70768600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:70765800-70768600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:70765800-70768600	Weak transcription	Fetal Lung	lung
17	chr7:70765800-70769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:70766000-70768600	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:70766200-70769200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:70766200-70772400	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:70767600-70768800	Weak transcription	Ovary	ovary

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