Variant report

Variant	rs10263419
Chromosome Location	chr7:70772369-70772370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10252095	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs12532253	0.96[EUR][1000 genomes]
rs12699007	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12699008	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12699009	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12699010	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12699011	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699012	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17143419	0.89[CEU][hapmap]
rs1882572	0.83[AFR][1000 genomes]
rs1882573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702051	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4305790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4323379	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949288	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799967	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:70766200-70772400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:70769000-70772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70769200-70772400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:70769200-70772400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:70769200-70772600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:70769200-70772800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:70769200-70772800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70769200-70773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:70769400-70772400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:70769400-70772400	Weak transcription	NH-A	brain
14	chr7:70769400-70772600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:70769400-70772600	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:70769400-70772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:70769400-70772800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:70769400-70772800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:70769600-70772400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:70769600-70773000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:70769600-70773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:70769600-70773000	Weak transcription	Fetal Lung	lung
23	chr7:70769600-70773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:70770800-70772400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:70770800-70772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:70770800-70772800	Weak transcription	Ovary	ovary
27	chr7:70772200-70772400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:70772200-70772600	Enhancers	HSMMtube	muscle
29	chr7:70772200-70773200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:70772200-70773800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr7:70772200-70774200	Enhancers	Fetal Heart	heart
32	chr7:70772200-70774400	Enhancers	Rectal Smooth Muscle	rectum
33	chr7:70772200-70774400	Enhancers	HSMM	muscle

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