Variant report

Variant	rs1882572
Chromosome Location	chr7:70773760-70773761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10263419	0.83[AFR][1000 genomes]
rs1882573	0.83[AFR][1000 genomes]
rs4323379	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70772200-70773800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:70772200-70774200	Enhancers	Fetal Heart	heart
5	chr7:70772200-70774400	Enhancers	Rectal Smooth Muscle	rectum
6	chr7:70772200-70774400	Enhancers	HSMM	muscle
7	chr7:70772400-70773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:70772400-70774400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:70772400-70774400	Enhancers	Fetal Muscle Leg	muscle
10	chr7:70772400-70774400	Enhancers	NH-A	brain
11	chr7:70772600-70773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:70772600-70774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:70772800-70773800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:70772800-70773800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr7:70772800-70773800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr7:70772800-70774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:70772800-70774000	Enhancers	Fetal Muscle Trunk	muscle
18	chr7:70772800-70774000	Enhancers	Fetal Stomach	stomach
19	chr7:70772800-70774400	Enhancers	Ovary	ovary
20	chr7:70773000-70774400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70773000-70774400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:70773000-70775600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:70773000-70775800	Weak transcription	Aorta	Aorta
24	chr7:70773200-70773800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:70773200-70774200	Enhancers	Colon Smooth Muscle	Colon
26	chr7:70773200-70774600	Enhancers	Left Ventricle	heart
27	chr7:70773400-70773800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:70773400-70773800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:70773400-70773800	Flanking Active TSS	HSMMtube	muscle
30	chr7:70773400-70774200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:70773600-70773800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr7:70773600-70774200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:70773600-70774400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr7:70773600-70775200	Weak transcription	Brain Substantia Nigra	brain
37	chr7:70773600-70775400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:70773600-70776200	Weak transcription	Brain Anterior Caudate	brain
39	chr7:70773600-70778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:70773600-70778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:70773600-70778400	Weak transcription	Fetal Lung	lung

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