Variant report

Variant	rs1882573
Chromosome Location	chr7:70773865-70773866
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10252095	0.84[AMR][1000 genomes]
rs10263419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12532253	0.96[EUR][1000 genomes]
rs12699007	0.96[EUR][1000 genomes]
rs12699008	1.00[EUR][1000 genomes]
rs12699009	1.00[EUR][1000 genomes]
rs12699010	1.00[EUR][1000 genomes]
rs12699011	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699012	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1882572	0.83[AFR][1000 genomes]
rs34702051	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4305790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4323379	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949288	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799967	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70772200-70774200	Enhancers	Fetal Heart	heart
4	chr7:70772200-70774400	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:70772200-70774400	Enhancers	HSMM	muscle
6	chr7:70772400-70774400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:70772400-70774400	Enhancers	Fetal Muscle Leg	muscle
8	chr7:70772400-70774400	Enhancers	NH-A	brain
9	chr7:70772600-70774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:70772800-70774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:70772800-70774000	Enhancers	Fetal Muscle Trunk	muscle
12	chr7:70772800-70774000	Enhancers	Fetal Stomach	stomach
13	chr7:70772800-70774400	Enhancers	Ovary	ovary
14	chr7:70773000-70774400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:70773000-70774400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:70773000-70775600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:70773000-70775800	Weak transcription	Aorta	Aorta
18	chr7:70773200-70774200	Enhancers	Colon Smooth Muscle	Colon
19	chr7:70773200-70774600	Enhancers	Left Ventricle	heart
20	chr7:70773400-70774200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:70773600-70774200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr7:70773600-70774400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr7:70773600-70775200	Weak transcription	Brain Substantia Nigra	brain
26	chr7:70773600-70775400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:70773600-70776200	Weak transcription	Brain Anterior Caudate	brain
28	chr7:70773600-70778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:70773600-70778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:70773600-70778400	Weak transcription	Fetal Lung	lung
31	chr7:70773800-70774000	Enhancers	Brain Angular Gyrus	brain
32	chr7:70773800-70774400	Enhancers	HSMMtube	muscle
33	chr7:70773800-70774800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:70773800-70775400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:70773800-70776600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:70773800-70778200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:70773800-70778400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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