Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70774205..70776294-chr7:70779015..70781506,2	K562	blood:

Variant related genes	Relation type
ENSG00000266688	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10224696	0.86[EUR][1000 genomes]
rs10240080	0.86[EUR][1000 genomes]
rs10252095	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10263419	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10281560	0.86[EUR][1000 genomes]
rs12532253	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12532676	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12540683	0.86[EUR][1000 genomes]
rs12699007	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12699008	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12699009	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12699010	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12699011	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12699012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699013	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12699032	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1882573	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2707422	0.82[EUR][1000 genomes]
rs35182494	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4305790	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4323379	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56340632	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62462185	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62462209	0.81[EUR][1000 genomes]
rs6949288	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71549400	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7803373	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:70778800-70780200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:70778800-70784400	Weak transcription	Brain Anterior Caudate	brain
7	chr7:70779000-70780600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70779200-70782200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70779600-70780200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70779800-70780800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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